OpenAI Foundation science!

San Francisco, CA
Alzheimer’s is one of medicine's hardest unsolved problems, and one of the most devastating. At the OpenAI Foundation, we believe AI is well suited to its complexity. We're directing over $100M to scientists mapping the disease, designing drugs, & more. I wrote about it here: openaifoundation.org/news/ai…
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Jacob Trefethen retweeted
It was a pleasure working with @asteriskmgzn on this piece, which looks at a case study where regulatory reliance works well. Thank you @chengela and @clarabcollier for making the editing process wonderful!
Zambia approved a new HIV drug in just 12 days, far outpacing the average of 4-7 years in sub-Saharan Africa. How did they do it? Most countries spend years reviewing drug applications that have already been approved by the FDA or EMA. Zambia decided to do things differently, building a system that treated prior approvals from trusted agencies as a starting point. @EnlliMcA dives into Zambia’s process, and what we can learn from their experience:
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Jacob Trefethen retweeted
I really like how this is thought out
Here's more on our initial strategy behind these grants, and other grants we're investigating in Public Data for Health, that may be of interest to researchers: Our starting hypotheses for areas OpenAI Foundation support can be most useful are: connected data, scarce data, and direct data. Datasets we fund will usually have one or two of these properties, described in more detail in the next tweets, and in rare cases will share all three properties. Across all datasets, we believe making data broadly accessible, while ensuring privacy whenever that relates to patient data, will become increasingly important. This will allow researchers to build on each other’s work, and scientific progress to emerge from unexpected places.
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Here's more on our initial strategy behind these grants, and other grants we're investigating in Public Data for Health, that may be of interest to researchers: Our starting hypotheses for areas OpenAI Foundation support can be most useful are: connected data, scarce data, and direct data. Datasets we fund will usually have one or two of these properties, described in more detail in the next tweets, and in rare cases will share all three properties. Across all datasets, we believe making data broadly accessible, while ensuring privacy whenever that relates to patient data, will become increasingly important. This will allow researchers to build on each other’s work, and scientific progress to emerge from unexpected places.
At the OpenAI Foundation, we believe breakthroughs against disease will come from pairing intelligence with more observations of the world – in other words, more data. Today, we're announcing over $125M in grants, launching our second science program: openaifoundation.org/news/pu…
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3. Direct data: Measuring biological and clinical states closest to what matters 🔬 Biology has spent much of its history measuring what was easy or cheap to measure. For instance: measuring individual cell data over human clinical data, or RNA expression rather than proteins. These proxies have been enormously useful, but they can also become detached from the goals of understanding biology, and of preventing and treating disease. In cases like this, we want to give researchers the resources they need to assemble datasets that measure what matters most. It may also be the case that the necessary instruments to measure “biological truth” do not yet exist, or are prohibitively expensive to use at scale. Within this program, we hope to support both initiatives – new data, and new tools. For example, our grant to @UNC to establish the Initiative for Generative Immunotherapy will allow the team at UNC Lineberger and UNC Health to produce the human-grounded data necessary to improve the next generation of cancer vaccines. That means measuring tumor cells’ surface proteins directly, as well as patients’ T cell responses, rather than “only” sequencing the tumor. This data is expensive to create; by doing it comprehensively this time, and making the results open, we hope all future cancer vaccine efforts will be able to benefit. In particular, if this project is successful, future vaccine candidates will be able to enter human dosing with a stronger set of targets. That should improve their chances of working, and increase what can be learned when they do not.
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Making sure data is accessible to researchers Finally, across all of our grants, we are ensuring the resulting datasets are as accessible as possible to researchers around the world. For much of scientific history, testing hypotheses was a primary bottleneck on discovery. There was only so much “intelligence” available to throw at problems—a set number of graduate students and career scientists, who generated data and analyzed that data around a problem. AI’s continuing progress in coding and data analysis breaks that assumption. Analyzing data may become vastly more scalable, with insights emerging from collaborations that are hard to foresee at the time the data are generated. Our mission is to ensure that artificial general intelligence benefits all of humanity. Scientific data created with our support should be made broadly available, while maintaining individual privacy and consent wherever human data are involved. But accessibility goes beyond just the raw release of the data. We encourage grantees to publish their analyses via preprints, share data regularly rather than only at the end, and, if a grantee’s data is not “connected”, work in tandem with users of the data to assess its utility on biologically valuable problems. I'd like to thank @seemaychou, @PracheeAC, and @beckypferdehirt in particular for helping us think through what this can mean specifically, based on their experience, as well as inspiring us to think big.
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Jacob Trefethen retweeted
A drug dev regulatory knowledge base, cancer vaccines, and hill climbing ADMET. Good list of practical problems and ambitious awardees!
At the OpenAI Foundation, we believe breakthroughs against disease will come from pairing intelligence with more observations of the world – in other words, more data. Today, we're announcing over $125M in grants, launching our second science program: openaifoundation.org/news/pu…
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Jacob Trefethen retweeted
Excited to partner w/ @FoundationOAI to build (w/ OpenADMET) better HT methods to measure physicochemical properties and Distribution to enable the next set of AI model improvements through blinded competitions. Thanks @JacobTref & @owl_posting!!!
Replying to @JacobTref
Here are some of the projects we're supporting: OpenADMET will create open datasets, benchmarks, and blinded competitions to test whether AI models can be trained to predict how small molecules are absorbed and distributed across the body, to make drug development more predictable and reduce the failure rate of new drugs. 90% of drug candidates fail in clinical trials⁠. That is often due to the difficulty of predicting how they will be absorbed and move around the body – their “ADMET” properties⁠. Unsolved prediction challenges like this can be a good fit for AI, when paired with high quality data to ground the accuracy of predictions from different models. For example, AlphaFold2 transformed protein structure prediction using data from the Protein Data Bank⁠, in a competition against other modeling approaches run by CASP⁠. Protein structure prediction is now integrated into many drug discovery programs that will likely go on to benefit patients. To better predict ADMET properties of drug candidates, the OpenADMET team will develop high quality datasets to ground new predictive models, and run open challenges that researchers around the world can enter: openadmet.ghost.io/mapping-t…
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Proud of owl 😊
Replying to @iskander
Also can't heap enough praise on the grant process with @owl_posting, he got deep into the domain and crafted the project with us from a place of shared understanding. Even if OAIF hadn't funded the proposal, it still would have been worth it for the improved conceptual clarity
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Jacob Trefethen retweeted
impossible to overstate how cool this is. tl;dr: what if we could make rapid personalized cancer vaccines work reliably? alex and ben are going to take a crack at building that future for us. we're standing at the frontier of a golden era in biotechnology and human health
Starting a new thing at UNC with @BenjaminGVincen to figure out which tumor-specific pMHCs are actually on tumor cells & which vaccine platforms are more immunogenic. Lots of long-read WGS/scRNA, targeted mass spec, tumor-specific TCRs coming your way in the near future
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Jacob Trefethen retweeted
VERY excited about this first batch of OAIF grants in Public Data for Health. Great choices @owl_posting and @JacobTref 💪
At the OpenAI Foundation, we believe breakthroughs against disease will come from pairing intelligence with more observations of the world – in other words, more data. Today, we're announcing over $125M in grants, launching our second science program: openaifoundation.org/news/pu…
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Jacob Trefethen retweeted
Starting a new thing at UNC with @BenjaminGVincen to figure out which tumor-specific pMHCs are actually on tumor cells & which vaccine platforms are more immunogenic. Lots of long-read WGS/scRNA, targeted mass spec, tumor-specific TCRs coming your way in the near future
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Jacob Trefethen retweeted
More inspiring, excellent work from the OpenAI Foundation.
At the OpenAI Foundation, we believe breakthroughs against disease will come from pairing intelligence with more observations of the world – in other words, more data. Today, we're announcing over $125M in grants, launching our second science program: openaifoundation.org/news/pu…
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Jacob Trefethen retweeted
Amazing to see the @FoundationOAI funding the CTD Commons, a project that came out of @RuxandraTeslo's Launch Sequence proposal! The CTD Commons will purchase the FDA filing documents and clinical trial results from failed biotech companies to create an open-source library that will accelerate FDA approval timelines, lower compliance costs, and help unbottleneck AI's progress in the life sciences. Full project proposal: ifp.org/biotechs-lost-archiv…
At the OpenAI Foundation, we believe breakthroughs against disease will come from pairing intelligence with more observations of the world – in other words, more data. Today, we're announcing over $125M in grants, launching our second science program: openaifoundation.org/news/pu…
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Jacob Trefethen retweeted
I've often noted the difference between the "cure cancer" rhetoric and what they're actually doing. This closes some of that gap. 👊
At the OpenAI Foundation, we believe breakthroughs against disease will come from pairing intelligence with more observations of the world – in other words, more data. Today, we're announcing over $125M in grants, launching our second science program: openaifoundation.org/news/pu…
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Jacob Trefethen retweeted
Replying to @owl_posting
@owl_posting putting in the work!!! So many incredible initiatives funded
Today we’re excited to launch Public Data for Health, with more than $125M in initial grants to nonprofits and universities creating and opening up high-quality scientific datasets. AI is getting dramatically better at analyzing biology, but accelerating medical discovery depends on researchers having high-quality data to work with. Our goal is to make more valuable scientific data broadly available so researchers can build on each other’s work and accelerate discoveries that help prevent and treat disease. Learn more: openaifoundation.org/news/pu…
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I talked more about our strategy in Public Data for Health, and these first grants, with @GrinsteinJ: insideprecisionmedicine.com/…
At the OpenAI Foundation, we believe breakthroughs against disease will come from pairing intelligence with more observations of the world – in other words, more data. Today, we're announcing over $125M in grants, launching our second science program: openaifoundation.org/news/pu…
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Jacob Trefethen retweeted
Today, we are announcing our third cohort of residents! Each resident will receive up to $2M to work on a high impact scientific problem, with the governing principle being that they build something people actually use and build it openly.
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Jacob Trefethen retweeted
Extremely excited to announce our first grants for the Public Data for Health program at the OpenAI Foundation, amounting to $125M+ across a wide range of fields. More here + characteristics of datasets we are most excited about: openaifoundation.org/news/pu…
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