We build open source computational neuroanatomy software that works across species.
London/Munich
- Tweets 213
- Following 8
- Followers 643
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Bluesky at bsky.app/profile/brainglobe.…
Mastodon at mastodon.online/@brainglobe
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If you’re leaving this app, we’re on:
Mastodon at mastodon.online/@brainglobe
Bluesky at bsky.app/profile/brainglobe.…
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BrainGlobe retweeted
BrainGlobe has a new atlas, the prairie vole!
For more details see the blog: brainglobe.info/blog/prairie…
Original paper: doi.org/10.7554/eLife.87029.…
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BrainGlobe retweeted
We were very pleased to award the @brain_globe Initiative! Since 2020, they've been creating powerful and incredibly popular #OpenSource tools and software for the #Neuroscience community.
Read more about their work and stay tuned for next year’s awards! @UCLpress @ucylpay
.@brain_globe is improving the way neuroscientists analyse and visualise neuroimaging data 🐟🦀🧠
Find out more about their work, and their recent recognition from @UCLopenscience, in our latest blog: sainsburywellcome.org/web/bl…
#OpenSource #Neuroscience
ALT Dorsal view of the cavefish brain atlas
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BrainGlobe retweeted
.@brain_globe is improving the way neuroscientists analyse and visualise neuroimaging data 🐟🦀🧠
Find out more about their work, and their recent recognition from @UCLopenscience, in our latest blog: sainsburywellcome.org/web/bl…
#OpenSource #Neuroscience
ALT Dorsal view of the cavefish brain atlas
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BrainGlobe retweeted
Congratulations to the @brain_globe team on their Open Science Award 🙌
We’re excited to announce the winners of the UCL Open Science Awards 2024! 🏆 With amazing work from @UCLBrainScience to Research Software at @SWC_Neuro and #CitizenScience at @glo_pro, there’s a lot to celebrate! Join us on 23rd October during #OAWeek!
shorturl.at/uC9RE
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BrainGlobe has a new atlas, the Axolotl (Ambystoma mexicanum)!
For more details see the blog: brainglobe.info/blog/axolotl…
Original paper: doi.org/10.1038/s41598-021-8…
ALT Saggital view of the axotlotl atlas annotations.
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BrainGlobe retweeted
Interested on detecting and then visualizing cells in a full brain? 🧠 Don't miss our tutorial on how to do it using @brain_globe & BiaPy! Open source initiatives together are stronger 💪
Nice tutorial on how to combine BrainGlobe and @BiaPyX to detect cells in whole brain microscopy images.
We're always interested in ways to make our software interoperable with other tools.
biapy.readthedocs.io/en/late…
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Nice tutorial on how to combine BrainGlobe and @BiaPyX to detect cells in whole brain microscopy images.
We're always interested in ways to make our software interoperable with other tools.
biapy.readthedocs.io/en/late…
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BrainGlobe retweeted
We've just released the "brainmapper" widget allowing analysis of cellular distributions in whole-brain microscopy images entirely within @napari_imaging.
Full details available on the blog: brainglobe.info/blog/brainma…
ALT A screenshot of the brainmapper widget, showing the distribution of napari points within a BrainGlobe atlas.
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BrainGlobe retweeted
BrainGlobe now includes an atlas with barrel column annotations from Bolaños-Puchet & @TeskaAleksandra et al.
Full details on the blog: brainglobe.info/blog/barrel-…
Thanks to @axlbsi for bringing this to BrainGlobe!
Original paper: doi.org/10.1162/imag_a_00209
ALT Visualisation of some barrel columns using brainrender
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BrainGlobe now includes an atlas with barrel column annotations from Bolaños-Puchet & @TeskaAleksandra et al.
Full details on the blog: brainglobe.info/blog/barrel-…
Thanks to @axlbsi for bringing this to BrainGlobe!
Original paper: doi.org/10.1162/imag_a_00209
ALT Visualisation of some barrel columns using brainrender
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As with all BrainGlobe atlases, this can be used for atlas registration, cell detection, segmentation and visualisation, or via the BrainGlobe Atlas API in your own software.
See our website (brainglobe.info) and GitHub (github.com/brainglobe) for more details.
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We've just released the "brainmapper" widget allowing analysis of cellular distributions in whole-brain microscopy images entirely within @napari_imaging.
Full details available on the blog: brainglobe.info/blog/brainma…
ALT A screenshot of the brainmapper widget, showing the distribution of napari points within a BrainGlobe atlas.
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Documentation: brainglobe.info/documentatio…
Tutorial: brainglobe.info/tutorials/tr…
Contact: brainglobe.info/contact.html
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BrainGlobe retweeted
Come work at @SWC_Neuro with us (@swc_niu) and scientific computing to help us manage and share lots and lots of cool neuroscience data.
We’re hiring!
Join us as a Senior Research Data Steward. You’ll provide technically focused support and consultancy to researchers and promote Open Science and FAIR data principles.
Learn more and apply:
sainsburywellcome.org/web/co…
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We've added a new atlas, @KozolRobert's brain atlas of the blind Mexican cavefish, Astyanax mexicanus.
More details on the blog:
brainglobe.info/blog/cavefis…
ALT Dorsal view of the cavefish brain atlas annotations.
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BrainGlobe retweeted
Nice piece about our team (@swc_niu) at @SWC_Neuro & @GatsbyUCL.
We’re building open source software tools for neuroscience and machine learning.
Find out more at our website (neuroinformatics.dev) and GitHub (github.com/neuroinformatics-…).
Meet our Neuroinformatics Unit! Driven by an open science ethos, the team of research software engineers work closely with SWC and @GatsbyUCL researchers to build tools that improve data organisation, refine analysis pipelines, and more: sainsburywellcome.org/web/bl… @swc_niu
ALT The Neuroinformatics Unit in Spring 2024, clockwise from the top left: Sofia Miñano-Gonzalez, Igor Tatarnikov, Adam Tyson, Joe Ziminski, Viktor Plattner, Alessandro Felder, Chang Huan Lo, Niko Sirmpilatze, Laura Porta
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BrainGlobe retweeted
Meet our Neuroinformatics Unit! Driven by an open science ethos, the team of research software engineers work closely with SWC and @GatsbyUCL researchers to build tools that improve data organisation, refine analysis pipelines, and more: sainsburywellcome.org/web/bl… @swc_niu
ALT The Neuroinformatics Unit in Spring 2024, clockwise from the top left: Sofia Miñano-Gonzalez, Igor Tatarnikov, Adam Tyson, Joe Ziminski, Viktor Plattner, Alessandro Felder, Chang Huan Lo, Niko Sirmpilatze, Laura Porta
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