scverse@scverse_team

Foundational tools for omics data (mostly in python) Join us at Bluesky: scverse.bsky.social

 site-packages
scverse.org
Joined August 2020
87 Photos and videos
We’re looking for a Community Manager to help shape and support the growing scverse ecosystem. Deadline January 10, 2026! More details here: jobs.helmholtz-muenchen.de/j…
3
3
6
1,809
Our September 29th community meeting is cancelled. We will reconvene on November 10 after the scverse conference!
188
We will have our next community meeting on Tue, September 15, 2026, 11AM CST/ 9AM PST ! Michel Tarnow and Hannah Winter are presenting DiagVI which is part of scvi-tools- DiagVI integrates unpaired multi-modal single-cell data! Zoom registration link in 🧵
1
385
For more information, check out the following- DiagVI documentation - docs.scvi-tools.org/en/stabl… scvi-tools GitHub - github.com/scverse/scvi-tool… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
2
269
We will have our next community meeting on Tue, September 15, 2026, 11AM CST/ 9AM PST ! Michel Tarnow and Hannah Winter are presenting DiagVI which is part of scvi-tools- DiagVI integrates unpaired multi-modal single-cell data! Zoom registration link in 🧵
1
3
438
For more information, check out the following- DiagVI documentation - docs.scvi-tools.org/en/stabl… scvi-tools GitHub - github.com/scverse/scvi-tool… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
119
We will have our first community meeting after summer break on Tue, September 1, 2026, 11AM CST/ 9AM PST ! Taobu Hu, will be presenting on Cell-GPS! Zoom registration link in 🧵
1
3
600
For more information, check out the following- Preprint - biorxiv.org/content/10.64898… Cell-GPS docs - cell-gps.readthedocs.io/en/l… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
1
326
We will have our first community meeting after summer break on Tue, September 1, 2026, 11AM CST/ 9AM PST ! Taobu Hu, will be presenting on Cell-GPS! Zoom registration link in 🧵
1
1
4
502
For more information, check out the following- Preprint - biorxiv.org/content/10.64898… Cell-GPS docs - cell-gps.readthedocs.io/en/l… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…
183
Multi-omic trajectory inference from paired single-cell RNA-seq and ATAC-seq data? Meet ATLAS, our newest ecosystem package addition 🎉 💻 github.com/smilies-polito/at… 🔖 atlas-smilies.readthedocs.io… 📍@smiliespolito
6
20
1,380
🚨  Last call for applications! The hackathon on MS-based single-cell proteomics is closing soon - this is your final chance to join us in Vienna. We’ll be closing applications very soon - don’t miss out Details in 🧵
1
2
7
600
more replies
Reminder: This hackathon is focused on mass-spectrometry-based approaches (but open to anyone curious about MS-SCP ❤️ )
1
117
📅  When: September 4-5th, 2026 🌆  Where: Vienna Biocenter ⏳  Application deadline: 1st July 2026 (AOE) 📬  Acceptance notifications: 15th July 2026 (AOE) 👉  Apply here: luma.com/pwzuldwr Learn more about the event here: scverse.org/sc-proteomics202…
63
We will have our last community meeting before summer break on Tue, June 23, 2026, 11AM CST/ 9AM PST ! Ian Dirk Fichtner, will be presenting on ProteoPy: an AnnData-based framework for integrated proteomics analysis! Zoom registration link in 🧵
1
1
453
For more information, check out the following- Preprint - biorxiv.org/content/10.64898… ProteoPy GitHub - github.com/UKHD-NP/proteopy ProteoPy docs - proteopy.readthedocs.io/en/l… Zoom registration link for the meeting: lnkd.in/dZpbKKsY
333
We will have our last community meeting before summer break on Tue, June 23, 2026, 11AM CST/ 9AM PST ! Ian Dirk Fichtner, will be presenting on ProteoPy: an AnnData-based framework for integrated proteomics analysis! Zoom registration link in 🧵
1
1
473
For more information, check out the following- Preprint - biorxiv.org/content/10.64898… ProteoPy GitHub - github.com/UKHD-NP/proteopy ProteoPy docs - proteopy.readthedocs.io/en/l… Zoom registration link for the meeting: lnkd.in/dZpbKKsY
1
342
We will have our next community meeting on Tue, June 9, 2026, 11AM CST/ 9AM PST ! Marius Lange (@MariusLange8), will be presenting on CellMapper and CellAnnotator! Zoom registration link in 🧵
1
1
3
618
For more information, check out their documentation- CellMapper: cellmapper.readthedocs.io/en… CellAnnotator: cell-annotator.readthedocs.i… Zoom registration link for the meeting: scverse.zulipchat.com/#narro…

CellMapper

Tests Coverage Pre-commit.ci PyPI Documentation Downloads Zenodo k-NN-based mapping of cells across representations to transfer labels, embeddings and expression values. Works for millions of cells...

cellmapper.readthedocs.io
2
361
Load more