Here's a link in case you want to read our article online rdcu.be/dnyy8. Enjoy!

ScIsoX: a multidimensional framework for measuring isoform-level transcriptomic complexity in single cells. #SingleCell #scRNAseq #Isoforms @GenomeBiology genomebiology.biomedcentral.…

Scnanoseq: an nf-core pipeline for oxford nanopore single-cell RNA-sequencing. #scRNAseq #LongRead #Sequencing #Bioinformatics #Genomics academic.oup.com/bioinformat…

Excited to share our pre-print "γδ T cells modulate anti-tumor immunity in small cell lung cancer" from @Sutherland_Lab! doi.org/10.1101/2025.09.04.6… We demonstrate that γδ T cells are potentially valuable targets for SCLC therapy, especially in a MHC-I low setting. 🧵1/8

🌏 Make your mark in Melbourne! 🌏 We are looking for innovative researchers to join WEHI as Laboratory Heads and help lead the next wave of biomedical discovery. For more information and to apply 👇 wehi.edu.au/careers/make-you…

Part 1 and 2 of the Long-read sequencing Special Issues are now live! tinyurl.com/Genome-Res-LRS

1/: Excited to share our new study led by Luke Zappia on feature selection methods for single-cell RNA-seq data, now published @naturemethods ! We explore how choosing features impacts reference atlases & downstream analyses. 📊📚 nature.com/articles/s41592-0…

Our new paper examining how to analyse longread RNA-seq with no reference genome. We compare approaches for assembly and downstream analysis, from transcript accuracy to differential expression. Lead by @alexyfyf. Thnx to all contributors incl. @QGouil for the pea data!

⁦Congratulations ⁦@JinNg_1⁩ on being highly commended in the Discovery Award category at ⁦@ResAustralia⁩ Award ceremony 🎉🙌 ⁦@Burr_Lab⁩ ⁦@JCSMR⁩ @WEHI_research⁩ #lungcancer #SCLC

Thanks for the opportunity to present our SpatialBench Visium work at #ABACBS24! Happy to hear that RA's will be considered for awards too from next year 😊🙌

We’re hiring! I’m looking for a bioinformatician or post-doc to work on large-scale single-cell data (>13,000 samples) to identify biological variables contributing to molecular variation. Great opportunity working with a fun, talented team @GarvanInstitute. Please RT 1/2

Smart Energy Council’s John Grimes has roasted the “Tin Foil Hat Brigade Poppycock” LNP over their Nuclear proposal saying it’s “all about attacking Renewables & boosting Fossil Fuels.” Grimes calls out Dutton’s big list of fibs on Renewables inc his “1.4 Trillion Dollar Lie”🔥

🚨Big news! Five years in the making, our Zebrahub paper is now published in #Cell 🎉. We’ve built a timecourse atlas of zebrafish embryonic development, combining #scRNAseq data and #lightsheet live imaging, and delved deep into the dynamics of key progenitors. cell.com/cell/fulltext/S0092… Explore the datasets here: zebrahub.sf.czbiohub.org Led by @Merlin_Lange with key contributions by @ale_agranados, @Shruthi94Vijay, @jobragantini, @Sarah_E_Ancheta and @yangjoonkim #zebrahub #devbio #cell #Biology #imaging @CellCellPress @czbbiohub #CZBiohubS

If you're interested in DNA methylation, Indigenous Genomics and Precision Healthcare, we have a open postdoc position working with @sambuckberry on epigenetic biomarker development. For more information DM me. I'll also be at @abacbs in Sydney (Nov 4-7) if you want to chat

Alice Cleynen from @CNRS @umontpellier delivered a cool presentation on establishing a metric for RNA integrity/degradation in direct RNA sequencing (rDTI) and a method to disentangle technical from biological degradation signals (INDEGRA) ⬇️ github.com/Arnaroo/INDEGRA #ARNA

Carrying the burden of the first #ARNA2024 talk of the day, @JonathanGoeke from @astar_gis rebooted our brains with a tour de force review of his inspiring work on isoform discovery, quantification, benchmarking and detection of modified bases. Also a champion of #OpenScience

We present SMINT, a workflow for integrated analysis of spatial transcriptomics and metabolomics - featuring serial sectioning; immunostaining for segmentation; multi-omic registration; and unified analysis at cellular resolution. doi.org/10.1101/2024.10.15.6…

Come and join us! We are looking for a bioinformatician to join the lab. Work with single cell, multiome and spatial data from model systems and human samples! Our focus is lymphatics and blood brain barrier in development, regeneration and cancer. seek.com.au/job/79558172

Day 2⃣: explore #MachineLearning & AI for #Genomics Ritambhara Singh @BrownUniversity Pengyi Yang @SydneyMaths Sonika Tyagi @RMIT Robert Turnbull @MDAP_Unimelb Jiadong Mao, Sandeep Santhosh Kumar, Xiaochen Zhang @MelbIntGen Ben Goudey @TheFlorey bis.amsi.org.au/register

#BioInfoSummer 24 Day 1⃣: Whole cell modelling Prof. Markus Covert @Stanford Dr Megan Coomer #CellBauhaus Dr Adriana Zanca, Dr Lucy Ham, Dr Kaan Öcal, Dr Augustinas Šukys, Dr Sean Vittadello & Dr Michael Pan @UniMelb @vinisalazar_ @MelBioInf Register: bis.amsi.org.au

Are you interested in sc-spatial multiomics data, motivated by improving patient outcomes in lung cancer, and keen to join a young and growing lab taking single-cell atlassing to clinical applications? Please apply :). We're looking for Postdocs! jobs.helmholtz-muenchen.de/j…