New website resource for those interested in getting started with #QuPath coding. Forum post: forum.image.sc/t/website-an-… More advanced coding sections are available (image export, accepting suggestions), and I have included a walkthrough of a brightfield analysis. #bioimageanalysis

#HappyMicroscpyMonday #microscopycommunity- Join the AIMM user community on Friday, Feb 6, for a talk by Riccardo Massei on “Galaxy” as an image analysis platform. Learn more: bioimagingnorthamerica.org/e…

#microscopycommunity - Interested in working in Mexico? Joining BINA for a panel on getting hired in Mexico next week on Feb 5 in Spanish! (want to join but don’t speak Spanish? Zoom offers translated captions! buff.ly/nAJw5Ov) Learn More: buff.ly/dEAweSi

#HappyMicroscpyMonday #microscopycommunity - join us on this Wednesday for a discussion about the impact of AI on Light Microscopy! Learn more: buff.ly/pRl3jXL

#HappyFluorescenceFriday #microscopycommunity- Join the BINA Working Groups at a special session of the I&E Series on Jan 21- where groups share overview of their 2025 activities and a look ahead to 2026. Help shape what BINA presents next! Learn more: buff.ly/OynqTSy

#HappyFluorescenceFriday! #microscopycommunity- we hope you've been able to join us for GBIxBINA 2025! It's been a wonderful and educational week. If you weren't able to join, we will post some of the recorded sessions on our YouTube Channel in the coming weeks! #GBIxBINA2025

🌘Moon→Mars 🚀 2025 Annual AWG Meeting: 175+ members, 20+ talks, 25 posters = 1 day of space biology & space health powered by high quality data & open science. 1/12 ⬇️ 🎥 Watch the replay (starts at 4:00): piped.video/live/IyqYkJ5odMA… #NASA #OpenScience #OSDR #GeneLab #SpaceBiology

@E11BIO is excited to unveil PRISM technology for mapping brain wiring with simple light microscopes. Today, brain mapping in humans and other mammals is bottlenecked by accurate neuron tracing. PRISM uses molecular ID codes and AI to help neurons trace themselves. We discovered a new cell barcoding approach exceeding comparable methods by more than 750x. This is the heart of PRISM. We integrated this capability with microscopy and AI image analysis to automatically trace neurons at high resolution and annotate them with molecular features. This is a key advance towards economically viable brain mapping - 95% of costs stem from neuron tracing. It is also an important step towards democratizing neuron tracing for everyday neuroscience. Solving these problems is critical for curing brain disorders, building safer and human-like AI, and even simulating brain function. In our first pilot study, we acquired a unique dataset in mouse hippocampus. Barcodes improved the accuracy of tracing genetically labelled neurons by 8x – with a clear path to 100x or more. They also permit tracing across spatial gaps – essential for mitigating tissue section loss in whole-brain scaling. Using molecular annotation, we uncover an intriguing feature of synaptic organization, demonstrating how PRISM can be used for systematic discovery 🧵

What the heck - this is wild!

This new preprint was designed so poorly that it provides absolutely no proof that mRNA vaccines caused cancer/other diseases. It compared 10 (!) handpicked sick patients to 803 healthy patients. And behold, they show different RNA expression profiles. Because they were sick.

Used QuPath before and hit a challenge?👇 Our Call for Help is open! If you joined our May course (or know the basics), send us your image + analysis problem. Basic QuPath knowledge required Scan the QR code in the post to submit!! #PPBI #QuPath #ImageAnalysis #Microscopy

Happy #MicroscopyMonday! #microscopycommunity - join @Bioimagingna Thursday, June 5, to hear Thao Do speak as part of BINA’s Career Speaker Series hosted by the Early Career Working Group Learn more and register here: buff.ly/rcfgvC4

#microscopycommunity psst... happening Today, May 1st! Join @Bioimagingna’s Early Career WG for our Career Speaker Series on The BioImaging ToolBox: “Pre-nalysis”, Imaging, Analysis and Processing” Thursday May 1 Learn More & Register here buff.ly/erTIx4C

Thanks Nature and Christian featured our works. Liver cancer recurrence predicted by immune-cell location and gene expression. nature.com/articles/d41586-0…

For the last couple of years I've been developing DL segmentation utilities and notebooks with the goal of making it easier to reproduce deep learning results. This new video shows how to run augmentation, training and prediction all inside Napari piped.video/watch?v=ngps3eZV…

#qupath #bioimageanalysis see the Image.sc forum post here for the virtual option forum.image.sc/t/qupath-work…

#qupath #bioimageanalysis #pathology #FS2K2025 Pease get the word out! Virtual and in person (food!) options - though the virtual will not be as interactive as we will be paying most of our attention to the in-person crowd.

📢Announcing a QuPath Workshop 📢 February 24-25, 2025, in San Diego, CA, at the La Jolla Institute for Immunology. This year’s event will be all about Multiplex Immunofluorescence Analysis. The workshop will be followed by an 🎉 Advanced QuPath User’s Meeting 🎉- Feb 26

I learned yesterday the video I made in 2017 explaining how Bitcoin works was taken down, and my channel received a copyright strike (despite it being 100% my own content). The request seems to have been issued by a company chainpatrol, on behalf of Arbitrum, whose website says they "makes use of advanced LLM scanning" for "Brand Protection for Leading Web3 Companies" I could be wrong, but it sounds like there's a decent chance this means some bot managed to convince YouTube's bots that some re-upload of that video (of which there has been an incessant onslaught) was the original, and successfully issue the takedown and copyright strike request. It's naturally a little worrying that it should be possible to use these tools to issue fake takedown requests, considering that it only takes 3 to delete an entire channel.

Updating my CV and biosketch for 2025 and replacing all journal names with PMID or DOI. To be consistent with what we at HHMI ask all of our applicants to do @HHMINEWS Focus on the science, not the publication venue

RT @MicrobiomDigest: Infamous paper that popularized unproven COVID-19 treatment finally retracted Study on hydroxychloroquine by Didier R…