Making biology easier to engineer. $DNA

Boston, MA
Ginkgo Bioworks retweeted
Cells run on code. If you want to learn what makes them harder to code than computers, how much AI speeds it up, and about the robotic labs we build and sell at @ginkgo check out new Grow Everything Podcast. Links below! Thanks @messaginglab, @karlschmieder, and @erumazeez for having me on for the 200th episode!
Should we use @ginkgo’s autonomous lab to test if Claude’s gene editor actually works ? Lmk what you think
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Ginkgo Bioworks retweeted
Should we use @ginkgo’s autonomous lab to test if Claude’s gene editor actually works ? Lmk what you think
Today we announced the Claude-led discovery of a molecular machine that we suspect could represent a new gene editing mechanism. Its precise function, biotechnological utility (if any), or level of significance is not yet clear, but at minimum it is work I would have been proud to do as a PhD student. The work was done mostly, though not entirely, by Claude: our life sciences team suggested a broad area of research, Claude read through the literature and a bunch of genome data and discovered something interesting, then Claude proposed experiments to verify the discovery and our team carried them out. It’s easy to dismiss this as a one-off or curiosity, but we’ve repeatedly seen a pattern where AI performance in new intellectual domains goes from weak to superhuman in a matter of a few years. In 2023 models struggled to do math at the level of an average high-school student. In 2024 they started to do well on math competitions for the best high-schoolers in the country, in 2025 they started to solve minor open problems, in early 2026 more significant open problems, and in late 2026 they are beginning to solve the top few open problems in all of mathematics. We believe AI for biology is on a similar exponential trend. The main difference between biology and mathematics, of course, is that math can be done purely theoretically, while biology requires experimentation. Some have used this to draw the conclusion that AI’s utility in biology will be limited. We think this is wrong. As we’ve demonstrated today, humans can collaborate with AI to perform the experiments, validate key results in a few weeks and, if necessary, work with the AI to iterate on what they find. Eventually it may even be possible for Claude itself to safely perform the experiments by autonomously controlling lab equipment, with appropriate safeguards in place, but we aren’t doing that today (our lab is also a BSL1/BSL2 facility that doesn't handle materials dangerous to humans). More broadly, biomedical advancement has many stages — from fundamental biology discoveries, to translational research, to drug discovery, clinical trials, and finally the actual delivery of medicines and health care to patients. We are also interested in these later stages, but even simply accelerating the first stage of fundamental biological discoveries has the potential to speed up and broaden the entire pipeline. Improving our understanding of biology and sharpening biologists’ tools can drive forward all of the later stages, for example by identifying new drug targets, finding new therapeutic modalities, allowing for more precise measurement, and speeding up the experimental loop which itself further accelerates our understanding of biology. This will not in itself speed up clinical trial times, but if it succeeds it could greatly increase the number of promising candidates that go into the pipeline — an increase in throughput even though latency remains. In Machines of Loving Grace, I wrote about AI’s potential to “cure most diseases in 5-10 years” — a goal that sounds impossible, but one I believe is just barely possible if AI is applied to every stage of the pipeline. The first step is showing that AI can first help with, and then drive, biological discoveries. Claude’s discovery is the latest in a line of related prior work that goes back decades, beginning with systems like CRISPR, and continuing with discoveries like the bridge recombinase and VIPR in the past few years. Recently, there has been heightened interest in systems based on reverse transcriptase (RT) enzymes, the enzyme underlying the system Claude identified. And most recently, a Stanford team working independently described a novel RT system with an associated non-coding array that is in some ways similar to the one Claude found, though they are distinct systems that evolved independently from each other. I believe that we’re at the very beginning of finding such systems and developing them into powerful tools for biotechnology. I’m proud of the resources Anthropic has invested in accelerating the public benefits of AI through the life sciences, and we’re aiming both to grow our life sciences team and to work with other scientists to extend this approach to a broad range of problems. If you have a proposal for a research collaboration or are interested in joining our life sciences team, please reach out.
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How do you create a lab that runs its own experiments? Our autonomous lab, Nebula, is the largest in the world. It works by connecting over 100 Reconfigurable Automation Carts, which we call RACs, coordinated by a single integrated software system. Ginkgo automation engineer Rashard Thornhill is back to show the different instruments that RACs integrate into one big system that runs day and night. In this video, he breaks down the XPeel. If you want to see our autonomous in person, you can visit anytime. Sign up for a tour here: hubs.la/Q04y8lD90
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Ginkgo Computational Biologist @RoryKirchner noticed that the broker schedule for our autonomous lab, Nebula, looked like music production software. So naturally he turned all of the lab instruments into MIDI instruments. The result is the first ever musical track made by an autonomous lab. Introducing… DJ Nebula.
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@NextRungTech in Somerville, MA, models what WHEAT would actually cost at scale. Their analysis found that centralizing wheat germ extract and protein production into one facility lowers costs across every product modeled. Read more: linkedin.com/feed/update/urn… @RepPressley @SenWarren @SenMarkey @ARPA_H
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While developing analytical methods for WHEAT, @USPharmacopeia identified a previously unrecognized process-specific impurity, then synthesized and characterized it to enable routine measurement and control. That's how new manufacturing approaches build the evidence needed for regulatory confidence. Read more: linkedin.com/feed/update/urn… @RepRaskin @ChrisVanHollen @Sen_Alsobrooks @ARPA_H
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Purification is one of the priciest, most infrastructure-hungry steps in making a biologic. @IsolereBio (@Donaldson_Co) in RTP has demonstrated their IsoTag expressing inside a wheat germ cell-free system, a proof point on the path to a new purification route for biologics. Read more: linkedin.com/feed/update/urn… @ValerieFoushee @SenThomTillis @SenTedBuddNC @ARPA_H
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We're excited to announce that Ginkgo Datapoints has entered into a new agreement with Lilly TuneLab, a collaborative AI/ML drug discovery platform created by @EliLillyandCo. TuneLab supports biotech innovation by enabling participating companies to access AI/ML drug discovery models trained on decades of Lilly's proprietary research data. Ginkgo Datapoints will provide discovery data generation services, including small molecule developability (ADME) and antibody developability testing, to TuneLab companies. Ginkgo’s delivery of standardized assay protocols across the TuneLab ecosystem is expected to enable AI/ML models to learn more efficiently, increasing the overall impact of the TuneLab platform. New TuneLab members can now submit Datapoints’ generated data to access additional platform model benefits.  Read the full announcement here: hubs.la/Q04xDGrj0
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Some synthesis routes WHEAT needs don't exist anywhere outside the program. @OnDemandPharma developed the chemistry cascade to our target APIs, designed to work with U.S. materials so production stays domestic. Read more: lnkd.in/p/g4Eeimbb @RepRaskin @ChrisVanHollen @Sen_Alsobrooks @ARPA_H
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The REAL Summit is underway! Laboratory automation is evolving at an unprecedented pace. Co-hosted with Zifo and @MilliporeSigma at our Boston site, the summit brings pharma, biotech, automation, data, and AI leaders together — with candor — to accelerate our collective learning around the rapid maturation of physical AI and agentic platforms for pharmaceutical R&D. hubs.la/Q04xzz-X0
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We're proud to announce that Ginkgo has been selected to build an autonomous lab powered by its Reconfigurable Automation Cart (RAC) architecture at @novonordisk’s new R&D site in Waltham, Massachusetts. The agreement marks an expansion of the relationship between the two companies. Novo has already worked with Ginkgo as an external R&D partner, and now adds Ginkgo as a provider of the automation tools and software that power its internal laboratories for U.S. R&D.
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Cell-free extract normally needs a cold chain. @PSCBioTechnique in York, PA freeze-dried ours and kept ~90% of activity—easily clearing the bar set at 75%. Room-temperature extract means manufacturing that can go where the patients are, without the cost of refrigerated shipping and cold storage. Read more: linkedin.com/feed/update/urn… @RepScottPerry @SenMcCormickPA @SenFettermanPA @ARPA_H
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Wheat germ cell-free systems have always used leftover germ from flour milling. Tritica Biosciences in Wamego, KS, starts from intact embryos, from cultivars chosen for protein yield. Over 384 production runs. 107.5 L of extract. 5.76 metric tons of Kansas wheat. Read more: linkedin.com/feed/update/urn… @RepMann @JerryMoran @RogerMarshallMD @ARPA_H
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Massachusetts is one of the strongest biotech hubs in the world, and it's exactly why we built Ginkgo here. A new @masslivenews feature looks at why the state's research economy keeps thriving, even amid federal funding cuts and rising costs. The numbers back it up: R&D contributed $45 billion to Massachusetts' economy in 2023, and the sector has doubled in size over the past ten years, three times the national growth rate. Our CEO, @jrkelly, points to that same foundation – deep research talent, world-class universities, the infrastructure to match, and quality of life – that allows innovation to thrive in Boston. Here, Ginkgo is building the world's largest autonomous lab network. Read the full piece: hubs.la/Q04xcxHk0
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Seven companies. Five states. One question: can a grain of wheat make medicine? @ARPA_H selected @Ginkgo and the WHEAT team, under a $29M program, to make medicine closer to the people who need it. Over the next week, follow along as we spotlight the partners doing the work with us: Tritica Biosciences, @PSCBioTechnique, @ondemandpharma, Isolere Bio by Donaldson, @USPharmacopeia, Next Rung Technology
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